JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRIF1_chr1_110942190_110968922	0/0	t0012	1005	1	0	1	0	0	0	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	t0013	1004	1	1	0	0	0	0	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	t0014	1005	1	0	0	0	0	1	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	t0015	1004	1	0	0	1	0	0	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	t0016	1005	1	1	0	0	0	0	copy fasta	LRIF1	chr1	110942190	110968922
LRIG1_chr3_66373797_66506022	0/1	t0001	2082	120	14	26	62	5	12	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0002	2081	44	10	14	11	1	8	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	1/0	t0003	2082	17	5	1	9	0	1	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0004	2081	15	13	1	0	0	1	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0005	2081	7	7	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0006	2080	7	4	3	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0007	2080	5	1	1	1	1	1	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0008	2080	5	4	1	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0009	2081	4	4	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0010	2081	4	1	1	0	0	2	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0011	2081	3	0	0	3	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0012	2082	3	2	1	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0013	2086	3	3	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0014	2081	2	2	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0015	2082	1	0	1	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0016	2082	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0017	2084	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0018	2083	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0019	2083	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0020	2083	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0021	2082	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0022	2082	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0023	2081	1	0	0	0	1	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0024	2080	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0025	2082	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0026	2081	1	0	0	0	0	1	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0027	2086	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0028	2081	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0029	2080	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0030	2082	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0031	2082	1	0	0	0	0	1	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0032	2082	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0033	2082	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0034	2081	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0035	2082	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0036	2081	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0037	2082	1	0	0	0	0	1	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0038	2081	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	t0039	2082	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG2_chr1_113068198_113137260	0/0	t0001	8365	52	9	12	17	7	7	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0002	8368	24	7	3	9	2	3	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0003	8364	16	5	4	7	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0004	8366	11	1	2	4	0	4	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0005	8369	9	2	0	7	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0006	8371	6	0	6	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260