JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRIG2_chr1_113068198_113137260	0/0	t0007	8363	6	6	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0008	8369	5	0	2	1	2	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0009	8373	5	5	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0010	8364	5	5	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0011	8370	4	0	1	3	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0012	8367	4	0	0	4	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0013	8367	4	0	0	4	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0014	8360	4	2	2	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0015	8366	4	2	0	1	0	1	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0016	8365	3	3	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0017	8374	3	3	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0018	8380	3	3	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0019	8366	3	0	0	2	0	1	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0020	8364	3	0	0	3	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0021	8364	3	3	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0022	8369	2	0	2	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0023	8370	2	0	0	2	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0024	8369	2	0	0	2	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0025	8375	2	2	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0026	8375	2	2	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0027	8374	2	2	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0028	8381	2	2	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0029	8376	2	1	1	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0030	8368	2	0	1	0	0	1	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0031	8367	2	0	0	1	0	1	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0032	8366	2	2	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/1	t0033	8371	2	0	1	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0034	8369	2	0	0	2	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0035	8368	2	0	2	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0036	8365	2	0	2	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0037	8364	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0038	8365	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0039	8374	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0040	8365	1	0	0	0	0	1	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0041	8369	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0042	8370	1	0	1	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0043	8371	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0044	8370	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0045	8369	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0046	8372	1	0	1	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0047	8373	1	0	1	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0048	8370	1	0	1	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0049	8369	1	0	1	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0050	8369	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0051	8372	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0052	8370	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0053	8367	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0054	8379	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0055	8376	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0056	8370	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260