JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRIG2_chr1_113068198_113137260	0/0	t0057	8380	1	0	1	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0058	8370	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0059	8380	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0060	8371	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0061	8372	1	0	1	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0062	8382	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0063	8371	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0064	8363	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0065	8366	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0066	8365	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0067	8367	1	0	1	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0068	8369	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0069	8365	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0070	8364	1	0	0	0	0	1	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0071	8364	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0072	8365	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0073	8366	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0074	8365	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0075	8364	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0076	8366	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0077	8367	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0078	8366	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0079	8368	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0080	8369	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0081	8368	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	1/0	t0082	8369	1	0	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0083	8365	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0084	8367	1	0	0	0	0	1	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0085	8373	1	0	1	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0086	8370	1	0	0	0	0	1	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0087	8365	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0088	8367	1	0	1	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0089	8364	1	0	1	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0090	8368	1	0	0	0	1	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0091	8370	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0092	8372	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0093	8368	1	0	0	0	0	1	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0094	8371	1	0	1	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0095	8378	1	0	0	0	0	1	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0096	8370	1	0	1	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	t0097	8386	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG3_chr12_58867155_58925504	1/1	t0001	687	238	80	33	97	8	18	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	t0002	687	23	0	4	16	0	3	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	t0003	687	13	0	3	8	2	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	t0004	687	3	0	0	0	0	3	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	t0005	687	1	0	0	1	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIT1_chr10_84226520_84246546	0/0	t0001	524	202	69	29	77	7	20	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	1/0	t0002	515	184	10	35	111	5	22	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/1	t0003	524	16	7	7	0	1	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	t0004	524	5	4	1	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546