JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRIT1_chr10_84226520_84246546	0/0	t0005	515	3	2	1	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	t0006	524	3	3	0	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	t0007	524	2	2	0	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	t0008	524	2	0	2	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	t0009	515	1	1	0	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	t0010	524	1	0	1	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	t0011	524	1	0	0	0	1	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT2_chr10_84215571_84230544	1/1	t0001	1374	197	20	39	100	8	28	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	t0002	1374	80	39	16	11	4	10	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	t0003	1374	41	1	12	25	1	2	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	t0004	1374	33	1	4	22	1	5	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	t0005	1374	27	25	2	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	t0006	1374	20	0	2	18	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	t0007	1374	4	1	1	0	2	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	t0008	1374	3	0	2	0	1	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	t0009	1374	2	2	0	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	t0010	1374	2	0	0	2	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	t0011	1374	2	2	0	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	t0012	1374	1	0	0	0	0	1	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	t0013	1374	1	1	0	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	t0014	1374	1	1	0	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	t0015	1374	1	0	0	0	1	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	t0016	1374	1	1	0	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	t0017	1374	1	0	1	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	t0018	1374	1	0	1	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT3_chr4_109843107_109877315	0/1	t0001	1622	90	10	21	38	5	15	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	1/0	t0002	1622	50	3	15	21	2	8	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0003	1622	43	2	2	37	0	2	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0004	1622	33	3	11	11	3	5	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0005	1622	30	24	2	2	0	2	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0006	1622	23	0	0	21	0	2	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0007	1622	12	12	0	0	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0008	1622	9	7	2	0	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0009	1622	9	9	0	0	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0010	1622	7	7	0	0	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0011	1622	6	0	0	6	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0012	1622	4	0	0	4	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0013	1621	3	2	1	0	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0014	1622	3	3	0	0	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0015	1622	1	0	0	1	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0016	1622	1	1	0	0	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0017	1622	1	1	0	0	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0018	1622	1	1	0	0	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0019	1622	1	0	0	1	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0020	1622	1	1	0	0	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0021	1622	1	0	0	1	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0022	1622	1	0	0	1	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0023	1622	1	0	0	1	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	t0024	1622	1	0	0	1	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRMDA_chr10_75426624_76565168	0/0	t0001	2982	8	7	1	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168