JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRMDA_chr10_75426624_76565168	0/0	t0002	2982	5	4	1	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	t0003	2987	5	5	0	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	t0004	2982	4	2	1	1	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	t0005	2982	4	4	0	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	t0006	2982	3	2	0	1	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	t0007	2982	3	3	0	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	t0008	2982	2	1	1	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	t0009	2985	2	2	0	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	t0010	2982	1	1	0	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	t0011	2987	1	1	0	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	t0012	2982	1	0	1	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	t0013	2982	1	0	1	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	t0014	2982	1	0	1	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	t0015	2982	1	1	0	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	t0016	2982	1	1	0	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	t0017	2985	1	1	0	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	t0018	2982	1	0	1	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	t0019	2982	1	1	0	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRP10_chr14_22866740_22886713	0/1	t0001	4751	189	29	44	76	7	32	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0002	4751	24	2	5	15	1	1	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0003	4752	17	1	14	0	0	2	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0004	4751	16	0	1	13	0	2	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0005	4751	10	3	5	1	1	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0006	4751	8	0	2	6	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0007	4751	8	8	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0008	4752	7	7	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0009	4751	7	7	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0010	4751	7	0	0	7	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	1/0	t0011	4751	5	4	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0012	4751	4	4	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0013	4752	4	3	0	0	0	1	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0014	4751	4	4	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0015	4751	4	3	1	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0016	4751	3	3	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0017	4751	3	3	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0018	4751	3	1	2	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0019	4751	3	0	0	3	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0020	4751	3	0	0	3	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0021	4751	2	2	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0022	4751	2	0	0	2	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0023	4751	2	1	1	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0024	4751	2	2	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0025	4751	2	0	2	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0026	4751	2	0	0	2	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0027	4751	1	1	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0028	4751	1	1	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0029	4751	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0030	4751	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0031	4752	1	1	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0032	4751	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713