JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRP10_chr14_22866740_22886713	0/0	t0033	4751	1	0	0	0	0	1	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0034	4751	1	0	0	0	0	1	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0035	4717	1	1	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0036	4751	1	0	1	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0037	4751	1	0	1	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0038	4752	1	1	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0039	4751	1	1	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0040	4751	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0041	4751	1	0	0	0	0	1	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0042	4751	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0043	4751	1	0	1	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0044	4751	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0045	4751	1	0	0	0	1	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0046	4751	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0047	4751	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0048	4751	1	0	0	0	0	1	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0049	4751	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0050	4751	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0051	4751	1	1	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0052	4751	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	t0053	4751	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP11_chr6_149813757_149869359	0/1	t0001	2133	168	14	32	94	6	21	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	1/0	t0002	2132	78	7	17	32	7	14	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0003	2131	51	44	2	3	1	1	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0004	2137	9	9	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0005	2130	3	2	1	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0006	2130	3	3	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0007	2131	3	3	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0008	2132	2	0	2	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0009	2136	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0010	2133	1	0	0	1	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0011	2131	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0012	2131	1	0	0	0	0	1	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0013	2131	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0014	2131	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0015	2133	1	0	0	1	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0016	2133	1	0	0	1	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0017	2131	1	0	0	0	0	1	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0018	2133	1	0	0	1	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0019	2132	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0020	2132	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0021	2130	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0022	2132	1	0	0	1	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0023	2130	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0024	2131	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	t0025	2130	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP12_chr8_104484236_104594258	0/1	t0001	1796	63	11	14	29	4	4	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	1/0	t0002	1799	47	1	8	31	2	4	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0003	1814	28	2	11	13	1	1	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0004	1808	23	1	3	11	2	6	copy fasta	LRP12	chr8	104484236	104594258