JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRP12_chr8_104484236_104594258	0/0	t0005	1796	15	1	2	12	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0006	1793	11	9	1	1	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0007	1782	11	1	6	0	1	3	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0008	1811	10	1	6	1	0	2	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0009	1802	10	1	4	2	2	1	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0010	1802	10	0	4	4	0	2	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0011	1799	8	0	0	8	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0012	1791	6	6	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0013	1796	6	5	1	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0014	1790	5	5	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0015	1787	5	3	1	1	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0016	1813	4	0	0	4	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0017	1805	4	1	0	3	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0018	1799	4	1	1	1	0	1	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0019	1802	3	3	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0020	1793	3	0	0	3	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0021	1810	2	0	0	2	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0022	1812	2	2	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0023	1808	2	2	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0024	1797	2	2	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0025	1793	2	2	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0026	1784	2	0	1	0	1	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0027	1793	1	1	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0028	1790	1	1	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0029	1805	1	1	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0030	1799	1	1	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0031	2026	1	0	0	1	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0032	1816	1	0	0	0	1	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0033	1810	1	0	0	1	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0034	1799	1	0	0	1	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0035	1814	1	0	1	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0036	1803	1	1	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0037	1826	1	0	1	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0038	1819	1	0	0	1	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0039	1820	1	0	1	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0040	1816	1	0	0	1	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0041	1817	1	0	0	1	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0042	1816	1	1	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0043	1812	1	1	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0044	1806	1	1	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0045	1814	1	0	0	0	0	1	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0046	1805	1	0	0	0	0	1	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0047	1808	1	0	0	1	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0048	1811	1	0	0	0	0	1	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0049	1802	1	1	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0050	1799	1	0	0	0	0	1	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0051	1796	1	0	0	0	0	1	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0052	1799	1	1	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0053	1800	1	0	0	1	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0054	1785	1	1	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258