JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRP12_chr8_104484236_104594258	0/0	t0055	1782	1	1	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	t0056	1802	1	0	0	0	0	1	copy fasta	LRP12	chr8	104484236	104594258
LRP1B_chr2_140226423_142136016	0/0	t0001	2051	8	7	1	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	t0002	2051	5	5	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	t0003	2050	3	2	1	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	t0004	2051	3	3	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	t0005	2050	2	2	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	t0006	2050	2	2	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	t0007	2051	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	t0008	2051	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	t0009	2050	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	t0010	2051	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	t0011	2051	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1_chr12_57123483_57218361	0/0	t0001	1286	145	33	24	66	4	18	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	t0002	1287	51	16	17	9	4	5	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	t0003	1286	19	5	0	14	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/1	t0004	1285	15	11	1	2	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	t0005	1287	13	3	0	9	0	1	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	1/0	t0006	1289	7	6	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	t0007	1287	5	0	0	3	0	2	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	t0008	1286	4	0	3	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	t0009	1288	3	2	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	t0010	1288	3	2	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	t0011	1290	2	2	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	t0012	1287	2	2	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	t0013	1286	2	2	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	t0014	1286	1	0	1	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	t0015	1288	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	t0016	1287	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	t0017	1289	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	t0018	1287	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP2BP_chr4_185358872_185400924	0/0	t0001	4477	77	3	24	37	3	10	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0002	4474	22	1	5	16	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0003	4477	19	3	2	9	0	5	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	1/0	t0004	4476	10	6	0	0	0	3	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0005	4473	9	5	2	1	0	1	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0006	4477	8	1	1	5	0	1	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0007	4474	8	0	0	8	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0008	4475	8	0	8	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0009	4482	8	0	0	8	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0010	4473	8	2	4	0	0	2	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0011	4482	7	1	1	1	1	3	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0012	4476	7	0	0	7	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0013	4473	6	6	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0014	4477	5	0	0	5	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/1	t0015	4476	5	0	2	0	0	2	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0016	4473	5	0	3	0	2	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0017	4482	4	1	0	3	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0018	4474	3	3	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0019	4477	3	0	1	0	2	0	copy fasta	LRP2BP	chr4	185358872	185400924