JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRP2BP_chr4_185358872_185400924	0/0	t0020	4474	3	3	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0021	4477	3	0	0	3	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0022	4476	3	0	0	1	0	2	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0023	4476	3	3	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0024	4472	3	2	1	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0025	4473	2	2	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0026	4482	2	2	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0027	4474	2	0	0	0	2	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0028	4477	2	0	2	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0029	4479	2	0	1	1	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0030	4477	2	0	0	2	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0031	4474	2	1	0	1	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0032	4474	2	2	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0033	4474	2	2	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0034	4481	2	2	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0035	4475	2	2	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0036	4474	2	0	0	1	0	1	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0037	4473	2	2	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0038	4476	2	0	1	0	0	1	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0039	4473	2	0	1	0	0	1	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0040	4475	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0041	4474	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0042	4477	1	0	0	1	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0043	4477	1	0	0	1	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0044	4478	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0045	4481	1	0	0	0	1	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0046	4482	1	0	0	0	0	1	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0047	4476	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0048	4482	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0049	4480	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0050	4474	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0051	4477	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0052	4475	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0053	4474	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0054	4475	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0055	4474	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0056	4473	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0057	4475	1	0	0	1	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0058	4475	1	0	0	1	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0059	4474	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0060	4476	1	0	0	1	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0061	4474	1	0	1	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0062	4473	1	0	0	0	0	1	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0063	4471	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0064	4474	1	0	1	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0065	4471	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0066	4473	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0067	4471	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0068	4477	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	t0069	4482	1	0	0	1	0	0	copy fasta	LRP2BP	chr4	185358872	185400924