Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APOC4_chr19_44937237_44950496	1/1	t0001	233	373	73	75	166	14	43	copy fasta	APOC4	chr19	44937237	44950496
APOC4_chr19_44937237_44950496	0/0	t0002	233	15	15	0	0	0	0	copy fasta	APOC4	chr19	44937237	44950496
APOC4_chr19_44937237_44950496	0/0	t0003	233	6	5	1	0	0	0	copy fasta	APOC4	chr19	44937237	44950496
APOC4_chr19_44937237_44950496	0/0	t0004	233	3	1	2	0	0	0	copy fasta	APOC4	chr19	44937237	44950496
APOC4_chr19_44937237_44950496	0/0	t0005	233	1	0	0	0	0	1	copy fasta	APOC4	chr19	44937237	44950496
APOD_chr3_195563705_195588940	0/0	t0001	297	145	6	37	78	5	19	copy fasta	APOD	chr3	195563705	195588940
APOD_chr3_195563705_195588940	0/0	t0002	298	138	14	11	94	3	16	copy fasta	APOD	chr3	195563705	195588940
APOD_chr3_195563705_195588940	1/0	t0003	293	70	39	9	12	1	8	copy fasta	APOD	chr3	195563705	195588940
APOD_chr3_195563705_195588940	0/1	t0004	297	49	9	20	9	6	4	copy fasta	APOD	chr3	195563705	195588940
APOD_chr3_195563705_195588940	0/0	t0005	297	16	14	2	0	0	0	copy fasta	APOD	chr3	195563705	195588940
APOD_chr3_195563705_195588940	0/0	t0006	293	8	8	0	0	0	0	copy fasta	APOD	chr3	195563705	195588940
APOD_chr3_195563705_195588940	0/0	t0007	293	4	1	1	2	0	0	copy fasta	APOD	chr3	195563705	195588940
APOD_chr3_195563705_195588940	0/0	t0008	298	3	2	0	0	1	0	copy fasta	APOD	chr3	195563705	195588940
APOD_chr3_195563705_195588940	0/0	t0009	297	1	0	0	0	0	1	copy fasta	APOD	chr3	195563705	195588940
APOD_chr3_195563705_195588940	0/0	t0010	293	1	0	0	1	0	0	copy fasta	APOD	chr3	195563705	195588940
APOD_chr3_195563705_195588940	0/0	t0011	297	1	1	0	0	0	0	copy fasta	APOD	chr3	195563705	195588940
APOD_chr3_195563705_195588940	0/0	t0012	297	1	0	0	1	0	0	copy fasta	APOD	chr3	195563705	195588940
APOD_chr3_195563705_195588940	0/0	t0013	297	1	0	0	1	0	0	copy fasta	APOD	chr3	195563705	195588940
APOE_chr19_44900796_44914393	1/1	t0001	213	422	98	86	176	14	46	copy fasta	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	t0002	213	2	0	0	2	0	0	copy fasta	APOE	chr19	44900796	44914393
APOF_chr12_56355568_56367857	1/1	t0001	770	196	29	46	89	7	23	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	t0002	768	54	50	4	0	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	t0003	768	15	0	4	9	2	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	t0004	770	8	8	0	0	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	t0005	770	1	0	0	1	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	t0006	768	1	1	0	0	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	t0007	770	1	0	0	1	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	t0008	770	1	0	0	0	1	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	t0009	770	1	0	0	0	0	1	copy fasta	APOF	chr12	56355568	56367857
APOH_chr17_66207033_66234415	0/0	t0001	137	270	67	47	120	8	28	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	1/1	t0002	137	84	18	28	18	5	13	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	t0003	137	30	9	3	14	3	1	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	t0004	137	2	0	0	0	0	2	copy fasta	APOH	chr17	66207033	66234415
APOL1_chr22_36248133_36272525	0/0	t0001	1599	143	19	24	75	6	19	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	1/0	t0002	1599	56	2	7	35	4	7	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/1	t0003	1599	33	0	1	30	1	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0004	1599	25	0	1	21	0	3	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0005	1599	23	23	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0006	1599	12	1	7	1	1	2	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0007	1596	12	11	0	0	1	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0008	1599	12	0	11	0	0	1	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0009	1596	11	0	4	0	2	5	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0010	1599	7	6	1	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0011	1598	5	5	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0012	1596	4	0	2	0	0	2	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0013	1599	4	1	0	3	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0014	1599	3	2	1	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0015	1599	3	0	0	3	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0016	1596	3	0	1	0	0	2	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0017	1598	3	0	0	0	0	3	copy fasta	APOL1	chr22	36248133	36272525