JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRP2BP_chr4_185358872_185400924	0/0	t0120	4475	1	0	1	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2_chr2_169122109_169367534	0/1	t0001	1693	87	17	20	29	6	14	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	t0002	1691	44	10	6	25	1	2	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	1/0	t0003	1690	33	7	4	15	3	3	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	t0004	1694	15	11	1	2	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	t0005	1692	13	8	3	0	0	2	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	t0006	1695	13	9	1	0	0	3	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	t0007	1692	12	6	1	4	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	t0008	1692	8	4	1	1	2	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	t0009	1694	7	7	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	t0010	1695	5	5	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	t0011	1693	3	0	0	3	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	t0012	1693	2	0	0	2	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	t0013	1692	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	t0014	1693	1	0	1	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	t0015	1693	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	t0016	1693	1	0	1	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	t0017	1693	1	0	1	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	t0018	1696	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	t0019	1696	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	t0020	1697	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP3_chr19_33189330_33213864	0/1	t0001	1750	155	27	43	46	9	29	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	1/0	t0002	1746	128	25	9	86	3	4	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0003	1771	41	0	9	31	1	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0004	1746	22	21	1	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0005	1770	8	0	1	1	0	6	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0006	1746	8	0	0	7	0	1	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0007	1747	4	0	0	1	0	3	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0008	1750	4	4	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0009	1746	4	4	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0010	1747	4	0	1	3	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0011	1770	3	0	2	0	1	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0012	1770	2	0	1	1	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0013	1750	2	2	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0014	1747	2	2	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0015	1747	2	2	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0016	1747	2	2	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0017	1750	2	2	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0018	1747	2	0	1	1	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0019	1746	2	2	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0020	1750	2	0	0	0	1	1	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0021	1774	1	1	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0022	1774	1	1	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0023	1770	1	0	0	0	0	1	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0024	1774	1	0	0	1	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0025	1747	1	1	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0026	1746	1	0	0	0	1	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0027	1750	1	1	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0028	1750	1	0	0	0	0	1	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0029	1750	1	1	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864