JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRP3_chr19_33189330_33213864	0/0	t0030	1750	1	1	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0031	1746	1	1	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0032	1747	1	0	1	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	t0033	1746	1	0	1	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP4_chr11_46851717_46923550	0/0	t0001	2438	120	24	25	51	4	16	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/1	t0002	2438	101	27	23	38	2	10	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	t0003	2438	20	19	1	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	t0004	2438	9	0	0	9	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	t0005	2438	7	7	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	1/0	t0006	2438	5	3	1	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	t0007	2436	4	4	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	t0008	2438	2	0	0	2	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	t0009	2438	2	0	0	2	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	t0010	2438	2	2	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	t0011	2436	2	2	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	t0012	2465	1	1	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	t0013	2438	1	1	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP5_chr11_68307591_68454275	1/1	t0001	330	212	84	44	68	8	6	copy fasta	LRP5	chr11	68307591	68454275
LRP6_chr12_12111025_12272044	0/1	t0001	5403	16	1	4	8	0	2	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0002	5411	12	1	3	6	0	2	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0003	5407	12	1	2	6	0	3	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0004	5413	9	3	1	4	0	1	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0005	5411	8	0	1	4	3	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0006	5407	8	2	3	1	1	1	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0007	5405	8	1	1	4	0	2	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0008	5409	7	0	2	5	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0009	5413	6	1	0	5	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0010	5399	6	3	2	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0011	5395	6	0	0	6	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0012	5395	6	0	0	6	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0013	5405	5	0	3	0	1	1	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0014	5401	5	1	3	0	1	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0015	5411	5	4	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0016	5409	5	1	2	0	1	1	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0017	5405	5	0	3	1	0	1	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0018	5403	5	3	0	1	1	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0019	5417	3	2	1	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0020	5415	3	1	0	0	1	1	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0021	5415	3	0	3	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0022	5409	3	2	0	0	0	1	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0023	5399	3	0	0	3	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0024	5398	3	3	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0025	5391	3	0	2	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0026	5406	2	2	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0027	5393	2	0	2	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0028	5419	2	0	1	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0029	5417	2	0	0	1	0	1	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0030	5413	2	2	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	1/0	t0031	5411	2	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0032	5411	2	0	0	2	0	0	copy fasta	LRP6	chr12	12111025	12272044