JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRP6_chr12_12111025_12272044	0/0	t0033	5405	2	0	0	2	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0034	5403	2	0	0	2	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0035	5400	2	2	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0036	5401	2	0	0	2	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0037	5399	2	0	0	2	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0038	5395	2	2	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0039	5393	2	2	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0040	5393	2	1	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0041	5413	2	0	0	0	2	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0042	5413	2	0	0	2	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0043	5409	2	1	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0044	5411	2	2	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0045	5411	2	2	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0046	5411	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0047	5405	1	0	0	0	0	1	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0048	5411	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0049	5409	1	0	1	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0050	5407	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0051	5401	1	0	1	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0052	5407	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0053	5405	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0054	5419	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0055	5409	1	0	1	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0056	5407	1	0	0	0	0	1	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0057	5407	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0058	5405	1	0	1	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0059	5403	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0060	5401	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0061	5395	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0062	5391	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0063	5409	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0064	5411	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0065	5397	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0066	5396	1	0	0	0	0	1	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0067	5407	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0068	5421	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0069	5431	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0070	5425	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0071	5423	1	0	1	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0072	5419	1	0	1	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0073	5419	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0074	5417	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0075	5415	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0076	5415	1	0	1	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0077	5413	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0078	5413	1	0	1	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0079	5413	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0080	5411	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0081	5411	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0082	5411	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044