JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRP6_chr12_12111025_12272044	0/0	t0083	5409	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0084	5409	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0085	5406	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0086	5405	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0087	5403	1	0	0	0	0	1	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0088	5403	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0089	5403	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0090	5401	1	0	0	0	0	1	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0091	5401	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0092	5397	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0093	5397	1	0	0	0	0	1	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0094	5395	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0095	5413	1	0	1	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0096	5413	1	0	1	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0097	5409	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0098	5408	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0099	5413	1	0	0	0	0	1	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0100	5389	1	0	0	0	1	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0101	5413	1	0	1	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0102	5409	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0103	5411	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0104	5409	1	0	1	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0105	5411	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0106	5411	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0107	5385	1	0	0	0	0	1	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0108	5383	1	0	0	0	0	1	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0109	5373	1	0	1	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0110	5408	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0111	5406	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	t0112	5411	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP8_chr1_53237364_53333070	1/0	t0001	4813	74	17	16	20	4	16	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/1	t0002	4821	48	2	10	29	3	3	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0003	4813	22	0	3	19	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0004	4811	17	7	6	3	0	1	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0005	4818	13	11	2	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0006	4823	9	0	1	8	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0007	4811	6	6	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0008	4815	5	1	0	0	0	4	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0009	4819	5	1	1	1	1	1	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0010	4813	5	0	0	5	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0011	4808	5	4	0	0	0	1	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0012	4811	4	4	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0013	4816	4	0	0	4	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0014	4813	4	0	4	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0015	4813	4	4	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0016	4810	4	4	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0017	4813	3	0	3	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0018	4815	3	0	0	3	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0019	4813	2	1	0	1	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0020	4821	2	0	0	2	0	0	copy fasta	LRP8	chr1	53237364	53333070