JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRP8_chr1_53237364_53333070	0/0	t0021	4814	2	1	1	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0022	4817	2	0	0	2	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0023	4819	2	1	1	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0024	4817	2	2	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0025	4813	2	0	1	0	0	1	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0026	4815	2	0	0	2	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0027	4825	2	0	0	2	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0028	4827	2	0	0	2	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0029	4821	2	0	0	2	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0030	4821	2	0	0	2	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0031	4810	2	2	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0032	4818	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0033	4817	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0034	4814	1	0	0	1	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0035	4817	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0036	4813	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0037	4819	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0038	4815	1	0	1	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0039	4813	1	0	1	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0040	4811	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0041	4820	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0042	4819	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0043	4813	1	0	0	1	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0044	4813	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0045	4811	1	0	1	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0046	4813	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0047	4819	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0048	4821	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0049	4813	1	0	1	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0050	4817	1	0	1	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0051	4813	1	0	0	0	0	1	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0052	4811	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0053	4813	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0054	4813	1	0	0	0	0	1	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0055	4813	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0056	4815	1	0	0	0	0	1	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0057	4833	1	0	0	1	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0058	4821	1	0	0	1	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0059	4781	1	0	0	1	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0060	4812	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0061	4810	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0062	4814	1	0	0	1	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0063	4826	1	0	0	1	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0064	4808	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0065	4816	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	t0066	4814	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRPAP1_chr4_3498612_3537422	0/0	t0001	9497	22	5	8	1	0	8	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0002	9716	19	0	1	14	1	3	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0003	9498	16	0	4	12	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0004	9367	15	1	8	0	1	5	copy fasta	LRPAP1	chr4	3498612	3537422