JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRPAP1_chr4_3498612_3537422	0/0	t0055	9440	2	2	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0056	9442	2	0	0	2	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0057	9552	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0058	9553	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0059	9553	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0060	9496	1	0	0	0	0	1	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0061	9466	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0062	9497	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0063	9498	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0064	9499	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0065	9499	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0066	9499	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0067	9500	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0068	9443	1	0	0	0	1	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0069	9498	1	0	0	0	0	1	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0070	9498	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0071	9498	1	0	0	0	0	1	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0072	9499	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0073	9498	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0074	9553	1	0	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0075	9498	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0076	9608	1	0	0	0	0	1	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0077	9554	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0078	9498	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0079	9387	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0080	9387	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0081	9388	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0082	9502	1	0	0	0	0	1	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0083	9443	1	0	0	0	0	1	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0084	9444	1	0	0	0	0	1	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0085	9528	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0086	9497	1	0	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0087	9498	1	0	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0088	9387	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0089	9442	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0090	9497	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0091	9319	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0092	9319	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0093	9552	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0094	9386	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0095	9386	1	0	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0096	9410	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0097	9410	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0098	9056	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0099	9387	1	0	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0100	9387	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0101	9387	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0102	9441	1	0	0	0	0	1	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0103	9386	1	0	0	0	0	1	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0104	9386	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422