JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRPAP1_chr4_3498612_3537422	0/0	t0105	9600	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0106	9336	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0107	9169	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0108	9445	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0109	9308	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0110	9387	1	0	0	0	0	1	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0111	9387	1	0	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0112	9422	1	0	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0113	9367	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0114	9367	1	0	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0115	9147	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0116	9318	1	0	0	0	0	1	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0117	9373	1	0	0	0	1	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0118	9318	1	0	0	0	0	1	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0119	9263	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0120	9374	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0121	9373	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0122	9318	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0123	9319	1	0	0	0	0	1	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0124	9320	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0125	9294	1	0	0	0	1	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0126	9318	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0127	9318	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0128	9318	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0129	9318	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0130	9319	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0131	9321	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0132	9318	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0133	9264	1	0	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0134	9265	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0135	9153	1	0	0	0	0	1	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0136	9374	1	0	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0137	9318	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0138	9319	1	0	0	0	1	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0139	9319	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0140	9319	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0141	9320	1	0	0	0	0	1	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0142	9318	1	0	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0143	9319	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0144	9318	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0145	9318	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0146	9318	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0147	9262	1	0	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0148	11952	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0149	9325	1	0	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0150	9368	1	0	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0151	9441	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0152	9276	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0153	9936	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0154	9662	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422