JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRPAP1_chr4_3498612_3537422	0/0	t0155	9771	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0156	9772	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0157	9716	1	0	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0158	9717	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/1	t0159	9276	1	0	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0160	9716	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0161	9717	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0162	9440	1	0	0	0	0	1	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0163	9826	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0164	9771	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0165	9771	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0166	9606	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0167	9720	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0168	9716	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0169	9716	1	0	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0170	9717	1	0	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0171	9717	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0172	9716	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0173	9772	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0174	9771	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0175	9826	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0176	9827	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0177	9882	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0178	9771	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0179	9717	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0180	9772	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0181	9772	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0182	9441	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0183	9441	1	0	0	0	0	1	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0184	9773	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0185	9441	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0186	9441	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0187	9387	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0188	9496	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0189	9717	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0190	9716	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0191	9716	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0192	9771	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0193	9723	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0194	9663	1	0	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0195	9863	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	t0196	9367	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPPRC_chr2_43881224_44000989	1/1	t0001	2419	113	19	24	48	8	12	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0002	2418	32	17	11	1	2	1	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0003	2418	14	3	1	6	0	4	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0004	2430	14	0	7	5	1	1	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0005	2431	14	2	1	9	1	1	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0006	2439	14	0	1	12	0	1	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0007	2429	12	1	6	1	1	3	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0008	2419	10	5	3	2	0	0	copy fasta	LRPPRC	chr2	43881224	44000989