Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APOL1_chr22_36248133_36272525	0/0	t0018	1599	3	0	3	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0019	1599	2	2	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0020	1596	2	0	1	0	0	1	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0021	1597	2	0	2	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0022	1599	2	0	0	2	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0023	1599	2	1	1	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0024	1599	2	0	1	0	1	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0025	1600	2	0	0	2	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0026	1599	2	0	0	2	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0027	1599	2	0	0	2	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0028	1600	2	1	1	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0029	1599	1	0	0	0	0	1	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0030	1599	1	1	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0031	1598	1	0	1	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0032	1596	1	1	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0033	1600	1	0	0	1	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0034	1599	1	0	0	1	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0035	1599	1	0	1	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0036	1599	1	1	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0037	1600	1	0	0	1	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0038	1599	1	0	0	1	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0039	1599	1	1	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0040	1599	1	0	1	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0041	1598	1	1	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0042	1599	1	1	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0043	1599	1	1	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0044	1599	1	0	0	1	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0045	1599	1	1	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0046	1599	1	0	0	1	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0047	1598	1	1	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0048	1599	1	1	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0049	1599	1	0	0	1	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0050	1600	1	0	0	1	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0051	1599	1	1	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0052	1599	1	0	0	1	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0053	1585	1	0	0	1	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0054	1599	1	0	1	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0055	1597	1	1	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0056	1599	1	1	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0057	1600	1	0	1	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0058	1599	1	0	1	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0059	1599	1	0	1	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	t0060	1600	1	1	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL2_chr22_36221209_36244527	0/0	t0001	1416	131	1	17	101	3	9	copy fasta	APOL2	chr22	36221209	36244527
APOL2_chr22_36221209_36244527	0/1	t0002	1411	40	3	22	3	3	8	copy fasta	APOL2	chr22	36221209	36244527
APOL2_chr22_36221209_36244527	0/0	t0003	1415	35	2	17	8	1	7	copy fasta	APOL2	chr22	36221209	36244527
APOL2_chr22_36221209_36244527	0/0	t0004	1416	33	8	11	0	9	5	copy fasta	APOL2	chr22	36221209	36244527
APOL2_chr22_36221209_36244527	0/0	t0005	1415	22	22	0	0	0	0	copy fasta	APOL2	chr22	36221209	36244527
APOL2_chr22_36221209_36244527	0/0	t0006	1415	21	3	4	7	1	6	copy fasta	APOL2	chr22	36221209	36244527
APOL2_chr22_36221209_36244527	0/0	t0007	1417	12	1	0	10	0	1	copy fasta	APOL2	chr22	36221209	36244527