JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRPPRC_chr2_43881224_44000989	0/0	t0009	2438	10	0	2	8	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0010	2419	7	7	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0011	2441	6	0	2	4	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0012	2426	6	6	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0013	2444	5	0	0	5	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0014	2420	5	1	1	2	0	1	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0015	2432	5	0	3	2	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0016	2440	5	0	1	4	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0017	2442	4	0	1	3	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0018	2445	4	0	0	4	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0019	2427	4	4	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0020	2427	4	0	3	0	0	1	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0021	2426	3	2	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0022	2444	3	0	0	3	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0023	2426	3	2	1	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0024	2428	3	0	1	0	0	2	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0025	2418	2	2	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0026	2419	2	0	0	0	0	2	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0027	2419	2	2	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0028	2420	2	2	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0029	2433	2	0	2	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0030	2435	2	0	0	2	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0031	2436	2	0	0	2	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0032	2438	2	0	0	2	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0033	2428	2	2	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0034	2440	2	0	0	2	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0035	2445	1	0	0	0	1	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0036	2439	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0037	2428	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0038	2435	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0039	2441	1	0	0	0	0	1	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0040	2442	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0041	2443	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0042	2445	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0043	2418	1	0	0	0	0	1	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0044	2418	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0045	2419	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0046	2419	1	0	1	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0047	2419	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0048	2427	1	0	0	0	0	1	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0049	2428	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0050	2432	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0051	2437	1	0	0	0	0	1	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0052	2440	1	0	1	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0053	2441	1	0	1	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0054	2443	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0055	2446	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0056	2447	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0057	2449	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0058	2449	1	0	0	0	0	1	copy fasta	LRPPRC	chr2	43881224	44000989