JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRPPRC_chr2_43881224_44000989	0/0	t0059	2450	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0060	2430	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0061	2445	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0062	2426	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0063	2428	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0064	2436	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0065	2438	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0066	2439	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0067	2437	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0068	2426	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0069	2430	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0070	2427	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0071	2428	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	t0072	2419	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRR1_chr14_49593940_49619672	0/1	t0001	258	175	69	50	26	9	20	copy fasta	LRR1	chr14	49593940	49619672
LRR1_chr14_49593940_49619672	1/0	t0002	258	134	23	21	66	5	18	copy fasta	LRR1	chr14	49593940	49619672
LRR1_chr14_49593940_49619672	0/0	t0003	258	2	2	0	0	0	0	copy fasta	LRR1	chr14	49593940	49619672
LRR1_chr14_49593940_49619672	0/0	t0004	258	1	0	1	0	0	0	copy fasta	LRR1	chr14	49593940	49619672
LRRC10B_chr11_61503749_61516018	1/0	t0001	1392	239	75	50	73	12	28	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10B_chr11_61503749_61516018	0/0	t0002	1392	149	8	22	103	2	14	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10B_chr11_61503749_61516018	0/0	t0003	1392	13	12	0	1	0	0	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10B_chr11_61503749_61516018	0/0	t0004	1392	2	0	0	0	0	2	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10B_chr11_61503749_61516018	0/0	t0005	1392	1	1	0	0	0	0	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10B_chr11_61503749_61516018	0/0	t0006	1392	1	0	0	0	0	1	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10B_chr11_61503749_61516018	0/0	t0007	1392	1	1	0	0	0	0	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10B_chr11_61503749_61516018	0/0	t0008	1392	1	0	0	0	0	1	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10B_chr11_61503749_61516018	0/0	t0009	1392	1	0	0	1	0	0	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10B_chr11_61503749_61516018	0/0	t0010	1392	1	0	0	1	0	0	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10B_chr11_61503749_61516018	0/1	t0011	1392	1	0	0	0	0	0	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10B_chr11_61503749_61516018	0/0	t0012	1392	1	0	0	1	0	0	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10B_chr11_61503749_61516018	0/0	t0013	1392	1	1	0	0	0	0	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10_chr12_69603564_69615907	0/0	t0001	1511	164	53	34	50	4	23	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	t0002	1511	96	7	3	84	0	2	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	t0003	1511	85	9	16	50	3	7	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	1/1	t0004	1511	38	4	9	15	5	3	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	t0005	1511	14	12	2	0	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	t0006	1511	13	0	8	0	2	3	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	t0007	1511	11	10	1	0	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	t0008	1511	3	0	0	3	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	t0009	1511	2	0	0	0	0	2	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	t0010	1511	1	1	0	0	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	t0011	1511	1	0	1	0	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	t0012	1511	1	0	0	1	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	t0013	1511	1	0	0	1	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC14B_chr5_186495_201334	0/0	t0001	1026	138	31	30	65	2	10	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0002	1026	126	6	26	65	7	22	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	1/0	t0003	1026	77	2	15	53	1	5	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0004	1026	17	0	0	16	0	1	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0005	1026	17	3	9	0	4	1	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0006	1026	13	13	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334