JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC14B_chr5_186495_201334	0/0	t0007	1026	7	0	1	4	0	2	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0008	1026	6	0	0	6	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0009	1026	5	4	1	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0010	1026	5	5	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0011	1026	4	4	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0012	1026	4	4	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0013	1026	4	3	1	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0014	1026	3	3	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0015	1026	3	0	1	0	1	1	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0016	1026	3	3	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0017	1026	2	2	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0018	1026	2	2	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0019	1026	2	0	0	2	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0020	1026	2	1	1	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0021	1026	2	2	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/1	t0022	1026	2	0	0	0	0	1	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0023	1026	1	1	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0024	1026	1	0	0	0	0	1	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0025	1026	1	0	0	0	0	1	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0026	1026	1	1	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0027	1026	1	1	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0028	1026	1	0	0	1	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0029	1026	1	1	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0030	1026	1	1	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0031	1026	1	1	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0032	1026	1	0	0	1	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0033	1026	1	1	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0034	1026	1	0	0	1	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0035	1026	1	1	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0036	1026	1	0	0	1	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0037	1026	1	0	0	1	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0038	1026	1	0	1	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0039	1026	1	1	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0040	1026	1	1	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0041	1026	1	0	0	1	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0042	1026	1	0	0	0	0	1	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0043	1026	1	1	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0044	1026	1	1	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0045	1026	1	0	0	1	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0046	1026	1	0	1	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0047	1026	1	0	0	0	1	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	t0048	1026	1	0	1	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14_chr8_144512992_144530172	0/0	t0001	3857	91	4	26	42	5	14	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0002	3856	50	7	16	22	2	3	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	1/0	t0003	3856	29	0	3	25	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0004	3857	23	1	1	16	4	1	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/1	t0005	3856	16	0	6	9	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0006	3856	15	3	9	2	0	1	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0007	3856	15	1	4	6	1	3	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0008	3856	10	2	2	5	0	1	copy fasta	LRRC14	chr8	144512992	144530172