JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC14_chr8_144512992_144530172	0/0	t0009	3856	10	10	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0010	3858	8	8	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0011	3857	7	0	1	6	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0012	3856	7	0	0	7	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0013	3857	7	0	1	6	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0014	3857	6	6	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0015	3856	6	5	1	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0016	3856	5	0	2	0	1	2	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0017	3856	4	1	1	2	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0018	3857	4	0	0	1	0	3	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0019	3857	4	4	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0020	3856	3	0	0	3	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0021	3856	3	3	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0022	3857	3	0	1	2	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0023	3857	3	0	0	1	0	2	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0024	3857	3	3	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0025	3857	3	0	2	0	1	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0026	3858	3	3	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0027	3857	3	3	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0028	3855	2	2	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0029	3856	2	0	0	2	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0030	3856	2	0	0	2	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0031	3856	2	0	0	2	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0032	3856	2	0	0	2	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0033	3856	2	2	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0034	3857	2	2	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0035	3857	2	0	0	2	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0036	3857	2	0	0	0	2	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0037	3858	2	2	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0038	3857	2	0	0	2	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0039	3857	2	2	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0040	3857	2	2	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0041	3856	1	0	1	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0042	3856	1	0	0	0	0	1	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0043	3857	1	0	0	0	0	1	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0044	3856	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0045	3855	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0046	3857	1	0	0	1	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0047	3857	1	0	0	1	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0048	3856	1	0	0	1	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0049	3857	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0050	3856	1	0	0	1	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0051	3804	1	0	0	1	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0052	3857	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0053	3856	1	0	0	1	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0054	3856	1	0	1	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0055	3856	1	0	0	1	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0056	3856	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0057	3856	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0058	3857	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172