JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC14_chr8_144512992_144530172	0/0	t0059	3856	1	0	0	0	0	1	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0060	3857	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0061	3857	1	0	0	0	0	1	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0062	3858	1	0	1	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0063	3856	1	0	1	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0064	3856	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0065	3857	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0066	3856	1	0	0	1	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0067	3856	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0068	3858	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0069	3857	1	0	0	0	0	1	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0070	3858	1	0	1	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0071	3857	1	0	0	0	0	1	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0072	3858	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0073	3857	1	0	0	1	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0074	3857	1	0	1	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0075	3857	1	0	0	0	0	1	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0076	3857	1	0	0	1	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0077	3857	1	0	0	1	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0078	3857	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0079	3858	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0080	3858	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0081	3858	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0082	3856	1	0	0	0	0	1	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0083	3857	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0084	3858	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0085	3857	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0086	3856	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	t0087	3856	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC15_chr3_194350249_194374743	1/0	t0001	4136	174	4	41	91	7	30	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/1	t0002	4136	46	5	12	23	1	4	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0003	4071	23	8	2	3	4	6	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0004	4136	10	10	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0005	4136	9	7	2	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0006	4135	8	8	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0007	4071	8	0	0	8	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0008	4136	7	6	1	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0009	4136	5	4	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0010	4136	5	5	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0011	4136	5	5	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0012	4132	5	5	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0013	4201	4	4	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0014	4201	4	4	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0015	4135	3	0	1	0	0	2	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0016	4201	3	3	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0017	4136	3	0	0	3	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0018	4136	3	3	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0019	4071	3	1	2	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0020	4136	3	3	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0021	4136	2	2	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743