JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC15_chr3_194350249_194374743	0/0	t0022	4186	1	1	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0023	4071	1	1	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0024	4136	1	1	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0025	4136	1	1	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0026	4136	1	0	1	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0027	4136	1	0	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0028	4136	1	0	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0029	4071	1	1	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0030	4071	1	1	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0031	4136	1	0	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0032	4136	1	0	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0033	4136	1	0	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0034	4136	1	0	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0035	4201	1	1	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0036	4136	1	1	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0037	4136	1	1	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0038	4136	1	0	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0039	4201	1	1	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0040	4201	1	0	1	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0041	4201	1	0	1	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0042	4136	1	0	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0043	4071	1	0	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0044	4136	1	0	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0045	4136	1	1	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	t0046	4136	1	0	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC17_chr7_102908000_102950111	1/1	t0001	791	362	87	63	155	16	39	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	t0002	791	31	0	1	29	0	1	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	t0003	791	4	0	0	4	0	0	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	t0004	791	1	1	0	0	0	0	copy fasta	LRRC17	chr7	102908000	102950111
LRRC18_chr10_48904480_48944840	1/1	t0001	1029	309	26	59	171	13	38	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	t0002	1031	37	27	9	0	1	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	t0003	1029	36	15	9	0	4	8	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	t0004	1029	11	11	0	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	t0005	1029	7	0	0	7	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	t0006	1029	6	5	1	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	t0007	1029	6	6	0	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	t0008	1029	1	1	0	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	t0009	1029	1	1	0	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	t0010	1029	1	1	0	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	t0011	1029	1	0	0	1	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	t0012	1029	1	0	0	1	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	t0013	1029	1	0	0	1	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	t0014	1029	1	1	0	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	t0015	1029	1	0	0	1	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC19_chr9_26988136_27010672	0/1	t0001	2476	203	47	49	64	12	30	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0002	2476	88	3	14	65	0	6	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0003	2476	15	2	4	5	1	3	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0004	2476	14	5	4	0	3	2	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	1/0	t0005	2476	10	9	0	0	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0006	2477	10	3	2	0	1	4	copy fasta	LRRC19	chr9	26988136	27010672