JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC19_chr9_26988136_27010672	0/0	t0007	2475	5	0	0	4	1	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0008	2476	5	4	1	0	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0009	2476	4	2	2	0	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0010	2476	4	4	0	0	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0011	2476	4	4	0	0	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0012	2477	3	0	1	2	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0013	2477	3	3	0	0	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0014	2475	2	0	0	2	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0015	2476	2	0	0	2	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0016	2476	2	0	0	0	0	2	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0017	2476	2	2	0	0	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0018	2476	2	2	0	0	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0019	2476	1	1	0	0	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0020	2475	1	1	0	0	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0021	2475	1	0	0	0	0	1	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0022	2476	1	0	0	1	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0023	2476	1	0	0	1	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0024	2476	1	0	0	0	0	1	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0025	2477	1	1	0	0	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0026	2477	1	0	0	0	0	1	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0027	2477	1	1	0	0	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0028	2477	1	0	1	0	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0029	2498	1	0	0	1	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	t0030	2476	1	0	0	1	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC1_chr6_53790005_53929125	0/1	t0001	1585	204	56	37	79	9	22	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	t0002	1584	103	8	27	58	2	8	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	1/0	t0003	1585	36	16	12	2	0	5	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	t0004	1584	9	0	0	8	0	1	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	t0005	1585	3	3	0	0	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	t0006	1585	3	3	0	0	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	t0007	1585	3	3	0	0	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	t0008	1585	2	2	0	0	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	t0009	1585	2	0	0	0	1	1	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	t0010	1584	1	1	0	0	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	t0011	1585	1	1	0	0	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	t0012	1585	1	0	0	0	0	1	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	t0013	1585	1	1	0	0	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	t0014	1585	1	0	0	1	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC20_chr10_70293975_70387625	0/0	t0001	2520	65	5	16	38	0	6	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0002	2520	60	6	14	34	1	5	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/1	t0003	2520	59	5	15	30	3	5	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0004	2520	29	10	3	15	0	1	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0005	2520	23	4	9	10	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0006	2520	14	0	0	9	0	5	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0007	2520	10	5	2	0	2	1	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0008	2520	10	1	2	1	1	5	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0009	2520	9	3	2	0	3	1	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0010	2520	9	0	0	3	0	6	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0011	2520	8	3	2	1	0	2	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0012	2520	7	0	2	4	0	1	copy fasta	LRRC20	chr10	70293975	70387625