JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC20_chr10_70293975_70387625	0/0	t0013	2523	7	7	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0014	2520	7	0	0	7	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0015	2520	6	6	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0016	2520	5	5	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0017	2520	5	4	1	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0018	2520	4	3	0	1	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0019	2520	4	0	2	0	1	1	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	1/0	t0020	2520	3	2	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0021	2520	2	2	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0022	2520	2	2	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0023	2523	2	1	1	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0024	2523	2	2	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0025	2520	1	0	0	1	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0026	2520	1	0	1	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0027	2520	1	0	1	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0028	2520	1	0	1	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0029	2520	1	0	0	1	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0030	2520	1	1	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0031	2520	1	1	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0032	2520	1	1	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0033	2523	1	1	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0034	2520	1	1	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0035	2520	1	0	0	1	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0036	2523	1	1	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0037	2518	1	0	0	1	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0038	2520	1	1	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0039	2520	1	0	0	0	1	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0040	2520	1	0	0	0	0	1	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0041	2520	1	0	1	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0042	2520	1	0	0	1	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0043	2520	1	1	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0044	2520	1	0	1	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0045	2520	1	1	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0046	2523	1	1	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0047	2520	1	1	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0048	2520	1	1	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0049	2520	1	1	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	t0050	2520	1	1	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC23_chr12_6899822_6919229	1/0	t0001	667	154	13	37	70	9	24	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/1	t0002	667	107	34	17	34	5	16	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/0	t0003	667	42	19	0	22	0	1	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/0	t0004	667	5	3	0	2	0	0	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/0	t0005	667	4	0	2	2	0	0	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/0	t0006	667	3	2	0	0	0	1	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/0	t0007	667	1	1	0	0	0	0	copy fasta	LRRC23	chr12	6899822	6919229
LRRC24_chr8_144517388_144532033	1/1	t0001	221	392	93	81	156	16	44	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	t0002	237	5	5	0	0	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	t0003	221	1	0	1	0	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC25_chr19_18386137_18402622	1/0	t0001	1510	126	11	18	76	7	13	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	t0002	1510	113	8	28	65	4	8	copy fasta	LRRC25	chr19	18386137	18402622