JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC25_chr19_18386137_18402622	0/0	t0003	1510	68	3	11	36	4	14	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	t0004	1510	64	57	4	1	0	2	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/1	t0005	1510	27	7	11	0	2	6	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	t0006	1510	7	0	0	7	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	t0007	1510	5	5	0	0	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	t0008	1510	4	0	2	0	1	1	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	t0009	1510	3	0	0	3	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	t0010	1510	2	0	0	0	0	2	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	t0011	1510	2	2	0	0	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	t0012	1506	2	2	0	0	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	t0013	1510	1	1	0	0	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	t0014	1510	1	1	0	0	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	t0015	1481	1	0	0	1	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	t0016	1510	1	0	0	1	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	t0017	1510	1	1	0	0	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	t0018	1510	1	1	0	0	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	t0019	1510	1	0	0	1	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	t0020	1506	1	1	0	0	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	t0021	1510	1	0	0	1	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	t0022	1510	1	0	0	1	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	t0023	1510	1	0	0	1	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC26_chr9_137163758_137175051	1/1	t0001	205	403	94	82	161	18	46	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	t0002	205	1	0	0	1	0	0	copy fasta	LRRC26	chr9	137163758	137175051
LRRC27_chr10_132327193_132386508	1/0	t0001	6379	104	2	25	59	4	13	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0002	6385	22	19	0	1	1	1	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0003	6385	20	2	4	13	1	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0004	6386	20	0	6	10	2	2	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0005	6386	15	12	3	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0006	6385	14	12	2	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0007	6385	11	3	4	0	2	2	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0008	6386	7	6	1	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0009	6385	7	5	2	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0010	6384	6	1	2	0	3	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0011	6385	4	4	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0012	6385	4	0	4	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/1	t0013	6386	4	0	2	0	1	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0014	6385	3	2	1	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0015	6384	3	2	1	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0016	6384	2	0	2	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0017	6385	2	2	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0018	6379	2	0	0	2	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0019	6386	2	0	0	2	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0020	6385	2	0	1	1	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0021	6385	2	2	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0022	6384	1	0	0	0	0	1	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0023	6379	1	0	0	1	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0024	6386	1	0	0	1	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0025	6386	1	1	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0026	6386	1	1	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0027	6384	1	0	1	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508