JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC27_chr10_132327193_132386508	0/0	t0028	6379	1	0	0	1	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0029	6386	1	1	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0030	6379	1	0	0	1	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0031	6379	1	0	0	0	0	1	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0032	6379	1	0	0	0	0	1	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0033	6379	1	0	1	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0034	6379	1	0	0	1	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0035	6378	1	0	0	1	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0036	6247	1	1	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0037	6379	1	0	0	1	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0038	6379	1	0	0	1	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0039	6378	1	0	0	1	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0040	6379	1	0	0	1	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0041	6385	1	1	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0042	6385	1	0	1	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0043	6386	1	0	0	1	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0044	6385	1	0	0	1	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0045	6385	1	1	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0046	6385	1	1	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0047	6385	1	1	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0048	6385	1	0	1	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0049	6385	1	1	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0050	6385	1	1	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0051	6386	1	0	0	0	0	1	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0052	6385	1	1	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0053	6379	1	0	0	1	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0054	6385	1	1	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	t0055	6386	1	0	0	1	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC28_chr15_99246481_99395729	0/0	t0001	4749	17	1	1	10	2	3	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0002	4739	16	0	0	16	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0003	4744	14	0	2	11	0	1	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0004	4749	8	0	0	4	0	4	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0005	4744	8	0	5	0	0	3	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0006	4734	7	6	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0007	4744	5	0	0	5	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0008	4739	4	0	0	4	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0009	4739	3	2	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0010	4739	3	0	0	3	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0011	4734	3	3	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0012	4744	3	1	1	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0013	4744	3	0	2	0	0	1	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0014	4744	3	0	1	2	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0015	4749	2	0	0	2	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0016	4749	2	0	2	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0017	4749	2	2	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0018	4749	2	2	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0019	4744	2	0	0	0	0	2	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0020	4732	2	2	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0021	4747	2	0	0	2	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0022	4739	2	0	0	0	2	0	copy fasta	LRRC28	chr15	99246481	99395729