JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
LRRC28_chr15_99246481_99395729	0/0	t0073	4744	1	0	0	1	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0074	4744	1	0	0	1	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0075	4744	1	0	0	0	1	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0076	4734	1	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0077	4734	1	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0078	4744	1	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0079	4744	1	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0080	4734	1	0	0	1	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0081	4742	1	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0082	4732	1	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0083	4732	1	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0084	4742	1	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0085	4732	1	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0086	4742	1	0	0	0	1	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0087	4749	1	0	0	1	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0088	4749	1	0	0	1	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0089	4739	1	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0090	4749	1	0	0	0	1	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0091	4749	1	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0092	4749	1	0	0	0	1	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0093	4747	1	0	0	1	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0094	4749	1	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0095	4749	1	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0096	4749	1	0	0	0	1	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0097	4749	1	0	0	1	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0098	4749	1	0	0	1	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0099	4749	1	0	0	1	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0100	4747	1	0	0	1	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0101	4739	1	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0102	4749	1	0	0	1	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0103	4749	1	0	0	0	1	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0104	4749	1	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0105	4749	1	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0106	4749	1	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0107	4739	1	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0108	4749	1	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0109	4749	1	0	0	1	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0110	4749	1	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0111	4749	1	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0112	4739	1	0	0	1	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0113	4749	1	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0114	4749	1	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0115	4739	1	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0116	4749	1	0	0	1	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0117	4749	1	0	0	0	1	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0118	4749	1	0	0	1	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0119	4749	1	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0120	4749	1	0	0	1	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0121	4749	1	0	0	1	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0122	4749	1	0	0	1	0	copy fasta	LRRC28	chr15	99246481	99395729