JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC28_chr15_99246481_99395729	0/0	t0123	4749	1	0	0	0	1	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0124	4739	1	0	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0125	4739	1	1	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0126	4749	1	0	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0127	4739	1	1	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0128	4749	1	0	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0129	4746	1	0	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0130	4736	1	1	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0131	4736	1	0	0	0	0	1	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0132	4746	1	0	0	0	0	1	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0133	4749	1	0	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0134	5057	1	0	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0135	4739	1	1	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0136	4749	1	0	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0137	4749	1	0	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0138	4739	1	0	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0139	4739	1	0	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0140	4749	1	0	0	0	0	1	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0141	4739	1	0	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0142	4749	1	0	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	1/0	t0143	4749	1	0	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0144	4749	1	0	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0145	4749	1	0	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0146	4749	1	0	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0147	4739	1	0	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0148	4739	1	1	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0149	4749	1	0	0	0	0	1	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0150	4749	1	0	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0151	4749	1	0	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0152	4749	1	1	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0153	4739	1	0	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0154	4739	1	0	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0155	4737	1	1	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0156	4737	1	1	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0157	4739	1	0	0	0	0	1	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0158	4749	1	0	0	0	1	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0159	4734	1	0	0	0	0	1	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0160	4734	1	1	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0161	4744	1	1	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0162	4744	1	1	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0163	4734	1	1	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0164	4734	1	0	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0165	4734	1	1	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0166	4744	1	0	0	0	0	1	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0167	4744	1	0	0	0	0	1	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0168	4744	1	0	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0169	4734	1	1	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0170	4744	1	0	0	0	0	1	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0171	4744	1	1	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	t0172	4744	1	0	0	0	0	1	copy fasta	LRRC28	chr15	99246481	99395729