JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC2_chr3_46510385_46571302	0/0	t0003	3775	28	12	7	7	1	1	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0004	3776	17	0	6	7	0	4	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0005	3776	17	16	1	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0006	3776	11	6	2	2	0	1	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0007	3774	7	2	5	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0008	3774	7	1	2	2	1	1	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0009	3777	5	0	2	2	1	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0010	3761	4	0	1	2	1	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0011	3775	3	0	0	1	0	2	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0012	3776	3	3	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0013	3775	3	3	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0014	3775	3	0	3	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0015	3761	3	0	0	3	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0016	3758	2	0	0	2	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0017	3776	2	0	0	0	0	2	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0018	3777	2	1	0	1	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0019	3775	2	2	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0020	3775	2	2	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0021	3760	2	0	0	2	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0022	3760	2	0	0	2	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0023	3775	2	0	0	2	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0024	3796	2	0	0	1	0	1	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0025	3776	1	0	0	1	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0026	3757	1	1	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0027	3776	1	0	0	0	0	1	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0028	3777	1	1	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0029	3777	1	1	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0030	3777	1	1	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0031	3775	1	1	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0032	3776	1	1	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0033	3775	1	0	0	1	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0034	3776	1	1	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0035	3776	1	1	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0036	3773	1	1	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0037	3775	1	0	1	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0038	3776	1	1	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0039	3776	1	1	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0040	3775	1	1	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0041	3775	1	0	0	1	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0042	3775	1	0	0	1	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0043	3776	1	1	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0044	3760	1	0	0	0	1	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0045	3760	1	1	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0046	3761	1	0	0	1	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0047	3775	1	0	0	1	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	t0048	3760	1	0	0	0	0	1	copy fasta	LRRC2	chr3	46510385	46571302
LRRC30_chr18_7226089_7237044	1/1	t0001	51	456	96	78	218	12	50	copy fasta	LRRC30	chr18	7226089	7237044
LRRC31_chr3_169834172_169874935	1/1	t0001	939	303	74	58	120	12	37	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	t0002	939	14	14	0	0	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	t0003	811	3	0	0	0	0	3	copy fasta	LRRC31	chr3	169834172	169874935