JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC31_chr3_169834172_169874935	0/0	t0004	939	1	1	0	0	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	t0005	939	1	1	0	0	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC32_chr11_76652524_76675747	0/0	t0001	2219	128	17	31	62	4	14	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0002	2219	118	31	5	73	0	9	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	1/0	t0003	2219	70	4	18	32	4	11	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0004	2219	39	1	9	21	2	6	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0005	2219	24	19	4	0	0	1	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0006	2219	17	2	8	0	4	3	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0007	2219	12	5	0	6	1	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0008	2219	6	2	1	3	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0009	2219	4	3	1	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0010	2219	3	0	0	3	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0011	2219	3	0	2	0	0	1	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0012	2219	3	3	0	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0013	2219	3	1	0	2	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0014	2219	3	0	0	3	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0015	2218	3	3	0	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0016	2218	2	2	0	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0017	2219	1	0	1	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0018	2219	1	0	0	1	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/1	t0019	2219	1	0	0	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0020	2219	1	0	1	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0021	2219	1	1	0	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0022	2219	1	1	0	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0023	2219	1	0	0	0	0	1	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0024	2219	1	0	0	0	1	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0025	2219	1	0	0	1	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0026	2219	1	0	1	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0027	2219	1	0	0	1	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0028	2219	1	1	0	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0029	2219	1	1	0	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0030	2219	1	0	0	0	0	1	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0031	2219	1	1	0	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	t0032	2219	1	0	0	0	0	1	copy fasta	LRRC32	chr11	76652524	76675747
LRRC34_chr3_169788003_169817904	1/1	t0001	989	303	73	47	145	6	30	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	t0002	984	7	5	1	0	0	1	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	t0003	989	4	4	0	0	0	0	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	t0004	989	3	1	2	0	0	0	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	t0005	989	1	0	0	0	0	1	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	t0006	989	1	0	0	1	0	0	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	t0007	989	1	0	0	1	0	0	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	t0008	989	1	1	0	0	0	0	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	t0009	989	1	0	0	1	0	0	copy fasta	LRRC34	chr3	169788003	169817904
LRRC36_chr16_67321815_67390204	1/1	t0001	164	157	53	36	36	8	22	copy fasta	LRRC36	chr16	67321815	67390204
LRRC36_chr16_67321815_67390204	0/0	t0002	164	34	32	2	0	0	0	copy fasta	LRRC36	chr16	67321815	67390204
LRRC36_chr16_67321815_67390204	0/0	t0003	164	3	3	0	0	0	0	copy fasta	LRRC36	chr16	67321815	67390204
LRRC37A2_chr17_46507468_46560646	0/0	t0001	311	46	13	10	13	6	4	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/1	t0002	313	44	18	11	11	2	1	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	t0003	311	19	3	7	0	2	7	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A3_chr17_64849130_64924478	1/1	t0001	1134	100	44	17	27	0	10	copy fasta	LRRC37A3	chr17	64849130	64924478