JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC37A3_chr17_64849130_64924478	0/0	t0002	1134	15	14	1	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	t0003	1132	8	7	1	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	t0004	1134	7	7	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	t0005	1134	2	2	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	t0006	1134	2	2	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	t0007	1134	1	1	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	t0008	1134	1	0	1	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	t0009	1134	1	0	0	1	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	t0010	1134	1	1	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A_chr17_46290131_46342794	1/0	t0001	75	55	26	4	22	0	2	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37B_chr17_32002383_32058487	1/1	t0001	1100	204	68	44	66	3	21	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	t0002	1100	22	0	9	0	4	9	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	t0003	1100	12	10	1	0	0	1	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	t0004	1100	1	0	0	0	0	1	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	t0005	1100	1	1	0	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	t0006	1100	1	0	0	0	1	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	t0007	1100	1	1	0	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC38_chr1_13469973_13519003	1/0	t0001	1284	221	62	54	66	14	24	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0002	1284	75	12	12	38	2	11	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0003	1284	45	2	4	37	0	2	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0004	1284	30	0	4	21	2	3	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0005	1284	17	0	0	13	0	4	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/1	t0006	1284	14	0	0	13	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0007	1284	13	13	0	0	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0008	1284	5	0	0	4	0	1	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0009	1284	5	0	0	4	0	1	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0010	1284	3	2	1	0	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0011	1302	2	0	0	2	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0012	1284	2	0	0	0	0	2	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0013	1284	2	0	0	2	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0014	1284	2	2	0	0	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0015	1284	2	2	0	0	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0016	1284	1	0	0	1	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0017	1284	1	0	0	1	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0018	1284	1	1	0	0	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0019	1270	1	0	0	0	0	1	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0020	1284	1	1	0	0	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0021	1284	1	0	0	1	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0022	1284	1	0	0	1	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0023	1284	1	1	0	0	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0024	1284	1	0	0	0	0	1	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	t0025	1284	1	0	1	0	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC39_chr1_100143448_100183256	1/1	t0001	835	235	71	53	69	13	27	copy fasta	LRRC39	chr1	100143448	100183256
LRRC39_chr1_100143448_100183256	0/0	t0002	835	29	9	2	17	0	1	copy fasta	LRRC39	chr1	100143448	100183256
LRRC39_chr1_100143448_100183256	0/0	t0003	835	22	3	3	9	1	6	copy fasta	LRRC39	chr1	100143448	100183256
LRRC39_chr1_100143448_100183256	0/0	t0004	835	1	1	0	0	0	0	copy fasta	LRRC39	chr1	100143448	100183256
LRRC39_chr1_100143448_100183256	0/0	t0005	835	1	0	0	1	0	0	copy fasta	LRRC39	chr1	100143448	100183256
LRRC3B_chr3_26617772_26715776	1/0	t0001	951	285	57	57	133	10	27	copy fasta	LRRC3B	chr3	26617772	26715776
LRRC3B_chr3_26617772_26715776	0/0	t0002	951	60	16	11	29	1	3	copy fasta	LRRC3B	chr3	26617772	26715776
LRRC3B_chr3_26617772_26715776	0/0	t0003	951	7	7	0	0	0	0	copy fasta	LRRC3B	chr3	26617772	26715776