JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC3B_chr3_26617772_26715776	0/0	t0004	951	7	7	0	0	0	0	copy fasta	LRRC3B	chr3	26617772	26715776
LRRC3B_chr3_26617772_26715776	0/1	t0005	951	2	0	1	0	0	0	copy fasta	LRRC3B	chr3	26617772	26715776
LRRC3B_chr3_26617772_26715776	0/0	t0006	951	2	0	0	2	0	0	copy fasta	LRRC3B	chr3	26617772	26715776
LRRC3B_chr3_26617772_26715776	0/0	t0007	951	2	0	1	0	0	1	copy fasta	LRRC3B	chr3	26617772	26715776
LRRC3B_chr3_26617772_26715776	0/0	t0008	951	1	0	0	1	0	0	copy fasta	LRRC3B	chr3	26617772	26715776
LRRC3B_chr3_26617772_26715776	0/0	t0009	951	1	1	0	0	0	0	copy fasta	LRRC3B	chr3	26617772	26715776
LRRC3B_chr3_26617772_26715776	0/0	t0010	951	1	0	0	0	0	1	copy fasta	LRRC3B	chr3	26617772	26715776
LRRC3B_chr3_26617772_26715776	0/0	t0011	951	1	0	0	0	1	0	copy fasta	LRRC3B	chr3	26617772	26715776
LRRC3B_chr3_26617772_26715776	0/0	t0012	951	1	0	0	1	0	0	copy fasta	LRRC3B	chr3	26617772	26715776
LRRC3C_chr17_39922732_39949999	1/1	t0001	523	379	68	65	186	18	40	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	t0002	523	20	20	0	0	0	0	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	t0003	525	3	2	1	0	0	0	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	t0004	525	1	1	0	0	0	0	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	t0005	523	1	1	0	0	0	0	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3_chr21_44450510_44467196	0/0	t0001	5072	142	8	27	89	6	12	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0002	5072	62	10	13	25	0	14	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	1/1	t0003	5072	41	1	8	22	1	7	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0004	5072	36	7	8	20	0	1	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0005	5072	16	15	1	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0006	5072	14	0	9	0	2	3	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0007	5072	9	8	0	0	0	1	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0008	5072	9	1	2	6	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0009	5072	8	0	5	1	2	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0010	5072	7	7	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0011	5072	7	6	1	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0012	5072	6	5	1	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0013	5072	4	0	0	2	0	2	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0014	5072	4	0	0	4	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0015	5072	3	3	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0016	5072	3	3	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0017	5072	3	3	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0018	5072	3	0	3	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0019	5072	2	2	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0020	5072	2	2	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0021	5072	2	0	0	2	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0022	5072	2	0	2	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0023	5072	1	0	0	0	0	1	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0024	5072	1	0	0	0	0	1	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0025	5072	1	0	0	1	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0026	5072	1	0	0	1	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0027	5072	1	1	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0028	5072	1	1	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0029	5072	1	1	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0030	5072	1	1	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0031	5072	1	1	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0032	5072	1	1	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0033	5072	1	0	0	0	0	1	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0034	5072	1	0	0	1	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0035	5072	1	0	0	1	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0036	5072	1	0	0	1	0	0	copy fasta	LRRC3	chr21	44450510	44467196