JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC45_chr17_82018305_82036151	0/0	t0004	686	3	0	1	0	2	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	t0005	686	3	0	0	3	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	t0006	686	1	1	0	0	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	t0007	686	1	0	0	0	0	1	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	t0008	686	1	1	0	0	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	t0009	686	1	0	0	0	0	1	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	t0010	686	1	1	0	0	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	t0011	686	1	0	0	0	1	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	t0012	686	1	0	0	1	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC46_chr17_47826670_47842719	1/1	t0001	920	349	89	67	143	13	35	copy fasta	LRRC46	chr17	47826670	47842719
LRRC46_chr17_47826670_47842719	0/0	t0002	920	36	7	15	2	5	7	copy fasta	LRRC46	chr17	47826670	47842719
LRRC46_chr17_47826670_47842719	0/0	t0003	920	3	0	0	3	0	0	copy fasta	LRRC46	chr17	47826670	47842719
LRRC46_chr17_47826670_47842719	0/0	t0004	920	3	3	0	0	0	0	copy fasta	LRRC46	chr17	47826670	47842719
LRRC46_chr17_47826670_47842719	0/0	t0005	920	1	1	0	0	0	0	copy fasta	LRRC46	chr17	47826670	47842719
LRRC47_chr1_3773559_3801498	1/0	t0001	2552	213	6	32	146	1	27	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0002	2552	33	5	17	0	5	6	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0003	2552	30	18	7	0	2	3	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/1	t0004	2552	29	9	7	0	6	6	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0005	2552	23	19	4	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0006	2553	19	0	2	17	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0007	2555	19	10	4	2	3	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0008	2552	6	6	0	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0009	2552	4	0	1	0	0	3	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0010	2552	3	0	0	0	0	3	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0011	2552	3	3	0	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0012	2552	3	3	0	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0013	2552	3	0	0	3	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0014	2553	3	0	0	3	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0015	2552	2	0	2	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0016	2552	2	0	1	0	0	1	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0017	2555	2	2	0	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0018	2552	2	2	0	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0019	2551	1	0	1	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0020	2552	1	0	0	0	1	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0021	2552	1	0	0	1	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0022	2565	1	0	1	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0023	2552	1	1	0	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0024	2552	1	0	0	0	0	1	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0025	2552	1	0	0	1	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0026	2552	1	0	0	1	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0027	2552	1	0	1	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0028	2552	1	1	0	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0029	2555	1	1	0	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0030	2555	1	1	0	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	t0031	2553	1	1	0	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC49_chr15_70887826_71058658	0/0	t0001	4116	94	25	19	45	0	5	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/1	t0002	4115	75	3	21	42	1	7	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0003	4116	46	19	10	13	0	4	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0004	4117	4	1	2	1	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0005	4116	4	2	2	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658