Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APOL3_chr22_36135329_36165755	0/0	t0002	1046	20	18	2	0	0	0	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	t0003	1046	17	2	6	2	2	5	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	1/0	t0004	1046	16	1	8	2	0	4	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	t0005	1046	10	10	0	0	0	0	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	t0006	1046	2	1	0	0	1	0	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	t0007	1046	2	2	0	0	0	0	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	t0008	1046	1	1	0	0	0	0	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	t0009	1046	1	0	1	0	0	0	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	t0010	1046	1	0	1	0	0	0	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	t0011	1046	1	1	0	0	0	0	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	t0012	1046	1	0	0	1	0	0	copy fasta	APOL3	chr22	36135329	36165755
APOL4_chr22_36184128_36206809	0/1	t0001	2017	207	52	26	93	10	25	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0002	2023	55	4	9	27	4	11	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	1/0	t0003	2023	44	2	25	12	1	3	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0004	2017	31	0	8	23	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0005	2023	18	2	0	14	0	2	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0006	2017	17	14	2	0	1	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0007	2017	17	0	2	15	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0008	2017	9	8	1	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0009	2017	4	0	0	4	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0010	2017	3	3	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0011	2023	3	3	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0012	2017	2	0	2	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0013	2017	2	2	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0014	2017	2	2	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0015	2017	1	0	1	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0016	2023	1	0	0	0	0	1	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0017	2017	1	1	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0018	2017	1	0	1	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0019	2023	1	0	0	1	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0020	2023	1	0	1	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0021	2023	1	1	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0022	2023	1	0	1	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0023	2023	1	1	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0024	2017	1	0	0	1	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0025	2017	1	1	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0026	2017	1	0	0	0	0	1	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0027	2017	1	0	0	1	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0028	2017	1	0	0	1	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0029	2023	1	1	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0030	2023	1	1	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0031	2023	1	0	0	0	0	1	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0032	2023	1	0	1	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0033	2017	1	0	0	1	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	t0034	2017	1	0	0	1	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL5_chr22_35712872_35734483	0/1	t0001	137	372	64	68	172	17	50	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	t0002	137	23	21	2	0	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	t0003	137	6	5	0	0	1	0	copy fasta	APOL5	chr22	35712872	35734483
APOL6_chr22_35643446_35673404	0/1	t0001	9034	195	20	42	98	10	24	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0002	9033	26	15	7	3	1	0	copy fasta	APOL6	chr22	35643446	35673404