JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC49_chr15_70887826_71058658	0/0	t0006	4116	4	0	1	3	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0007	4116	3	3	0	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0008	4115	2	0	0	2	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0009	4116	2	2	0	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0010	4116	2	0	2	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0011	4116	2	0	1	0	1	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0012	4116	2	2	0	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0013	4116	2	2	0	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0014	4117	2	2	0	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	1/0	t0015	4116	2	1	0	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0016	4116	1	0	0	0	0	1	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0017	4115	1	0	1	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0018	4116	1	0	0	1	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0019	4116	1	1	0	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0020	4116	1	1	0	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0021	4116	1	1	0	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0022	4116	1	0	1	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0023	4116	1	1	0	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0024	4116	1	1	0	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0025	4116	1	0	0	0	0	1	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0026	4116	1	0	0	1	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0027	4116	1	0	0	1	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0028	4116	1	1	0	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0029	4117	1	1	0	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0030	4116	1	0	0	1	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	t0031	4117	1	1	0	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC4B_chr19_50511892_50573435	1/1	t0001	1207	266	82	56	76	14	36	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	t0002	1207	70	1	16	41	2	10	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	t0003	1208	7	2	2	0	0	3	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	t0004	1208	4	0	0	4	0	0	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	t0005	1207	3	1	2	0	0	0	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	t0006	1207	2	2	0	0	0	0	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	t0007	1208	2	1	0	1	0	0	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	t0008	1207	1	0	0	1	0	0	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	t0009	1207	1	1	0	0	0	0	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	t0010	1207	1	0	1	0	0	0	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	t0011	1207	1	0	0	0	0	1	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	t0012	1208	1	0	1	0	0	0	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	t0013	1209	1	0	0	1	0	0	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4C_chr11_40109209_41464652	0/0	t0001	879	37	33	2	1	0	1	copy fasta	LRRC4C	chr11	40109209	41464652
LRRC4C_chr11_40109209_41464652	0/0	t0002	879	11	7	2	1	0	1	copy fasta	LRRC4C	chr11	40109209	41464652
LRRC4_chr7_128022071_128036437	1/0	t0001	2234	164	18	26	94	8	17	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/1	t0002	2234	112	40	24	26	8	13	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0003	2234	44	2	16	19	0	7	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0004	2235	9	7	0	0	0	2	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0005	2233	6	6	0	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0006	2233	6	6	0	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0007	2239	4	4	0	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0008	2235	3	3	0	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0009	2234	3	0	1	0	2	0	copy fasta	LRRC4	chr7	128022071	128036437