JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC4_chr7_128022071_128036437	0/0	t0010	2234	3	0	0	3	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0011	2234	3	0	3	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0012	2234	2	0	0	2	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0013	2239	2	1	1	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0014	2234	2	1	1	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0015	2234	1	1	0	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0016	2244	1	0	0	0	0	1	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0017	2244	1	1	0	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0018	2191	1	1	0	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0019	2234	1	0	1	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0020	2234	1	0	1	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0021	2234	1	1	0	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0022	2234	1	0	0	1	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0023	2234	1	0	0	1	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0024	2234	1	0	1	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0025	2233	1	1	0	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0026	2235	1	1	0	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0027	2234	1	0	1	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0028	2234	1	0	0	0	0	1	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	t0029	2218	1	0	0	0	0	1	copy fasta	LRRC4	chr7	128022071	128036437
LRRC51_chr11_72075850_72101895	1/1	t0001	1551	182	48	42	61	7	22	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0002	1549	60	10	9	35	2	4	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0003	1551	32	0	1	31	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0004	1552	14	0	2	5	0	7	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0005	1551	9	9	0	0	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0006	1551	7	7	0	0	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0007	1548	6	6	0	0	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0008	1550	3	2	0	0	0	1	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0009	1551	3	0	0	3	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0010	1551	2	2	0	0	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0011	1549	1	0	1	0	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0012	1550	1	1	0	0	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0013	1550	1	1	0	0	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0014	1550	1	0	0	1	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0015	1551	1	0	0	1	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0016	1551	1	0	1	0	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0017	1551	1	1	0	0	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0018	1551	1	0	0	0	1	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0019	1551	1	0	0	1	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0020	1551	1	1	0	0	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0021	1551	1	0	0	1	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0022	1551	1	1	0	0	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0023	1551	1	0	1	0	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0024	1552	1	0	0	1	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0025	1552	1	1	0	0	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0026	1552	1	0	0	1	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0027	1551	1	0	1	0	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	t0028	1551	1	0	0	1	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC52_chr1_165539000_165568957	0/1	t0001	431	180	22	37	92	5	23	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	t0002	431	50	15	12	11	5	7	copy fasta	LRRC52	chr1	165539000	165568957