JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC52_chr1_165539000_165568957	0/0	t0003	431	46	1	11	24	4	6	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	1/0	t0004	431	17	12	0	0	1	3	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	t0005	431	12	10	2	0	0	0	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	t0006	431	12	8	1	0	1	2	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	t0007	431	11	11	0	0	0	0	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	t0008	420	6	6	0	0	0	0	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	t0009	431	5	4	1	0	0	0	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	t0010	431	3	3	0	0	0	0	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	t0011	431	2	2	0	0	0	0	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	t0012	431	1	1	0	0	0	0	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	t0013	431	1	0	1	0	0	0	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	t0014	431	1	1	0	0	0	0	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	t0015	431	1	0	1	0	0	0	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	t0016	431	1	0	0	1	0	0	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	t0017	431	1	0	0	0	0	1	copy fasta	LRRC52	chr1	165539000	165568957
LRRC53_chr1_74464376_74517611	0/1	t0001	614	261	77	31	117	8	27	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	1/0	t0002	615	73	5	17	25	8	17	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	t0003	614	6	6	0	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	t0004	614	2	2	0	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC55_chr11_57176953_57196717	0/0	t0001	4308	122	9	27	66	1	19	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0002	4304	99	8	19	53	5	14	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0003	4306	85	9	15	48	6	7	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0004	4308	16	16	0	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0005	4308	13	12	1	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0006	4308	12	0	0	12	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/1	t0007	4308	12	0	9	1	1	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0008	4308	9	0	0	9	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0009	4308	7	7	0	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0010	4308	6	2	2	0	2	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0011	4308	5	5	0	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0012	4304	4	3	1	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0013	4308	4	4	0	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0014	4308	3	3	0	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0015	4302	3	3	0	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0016	4308	2	0	2	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0017	4308	2	0	0	0	0	2	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0018	4308	2	0	2	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0019	4304	2	0	0	2	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0020	4304	2	1	0	0	1	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0021	4308	2	2	0	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0022	4304	1	0	0	0	1	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0023	4308	1	1	0	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0024	4308	1	0	0	0	1	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0025	4306	1	0	1	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0026	4308	1	1	0	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0027	4308	1	0	0	0	0	1	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0028	4308	1	0	0	1	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0029	4308	1	0	0	1	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0030	4308	1	0	0	1	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0031	4308	1	1	0	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717