JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC55_chr11_57176953_57196717	0/0	t0032	4304	1	0	0	1	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0033	4304	1	0	0	1	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0034	4304	1	0	1	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	1/0	t0035	4308	1	0	0	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0036	4308	1	1	0	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0037	4308	1	1	0	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0038	4308	1	0	0	0	0	1	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0039	4308	1	1	0	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0040	4308	1	1	0	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	t0041	4308	1	1	0	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC56_chr11_532527_559912	0/0	t0001	1137	154	14	29	79	9	23	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0002	1137	53	7	11	25	1	9	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0003	1126	35	22	5	2	4	2	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0004	1137	24	18	4	2	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0005	1137	19	0	2	10	1	6	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0006	1126	13	12	1	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0007	1137	13	0	13	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0008	1137	12	0	1	8	1	2	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0009	1126	8	0	0	8	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0010	1137	6	6	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0011	1137	5	5	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0012	1137	5	0	4	0	1	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0013	1126	4	3	1	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0014	1137	3	0	0	3	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0015	1137	3	0	0	3	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0016	1137	3	2	1	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0017	1126	2	2	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0018	1137	2	1	1	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/1	t0019	1137	2	0	0	0	0	1	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0020	1126	2	0	2	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0021	1126	2	0	0	2	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0022	1126	2	2	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0023	1126	1	1	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0024	1126	1	1	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0025	1126	1	0	0	1	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0026	1126	1	0	0	1	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0027	1126	1	0	0	1	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0028	1137	1	0	0	1	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0029	1137	1	0	0	1	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0030	1137	1	0	0	1	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0031	1137	1	0	1	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0032	1137	1	0	0	0	1	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0033	1137	1	1	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0034	1137	1	0	0	1	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0035	1137	1	0	0	0	0	1	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0036	1126	1	0	0	1	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	t0037	1137	1	1	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC57_chr15_42532829_42553793	0/0	t0001	6384	79	1	14	43	5	16	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0002	6384	27	2	3	18	0	4	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0003	6386	24	1	0	20	0	3	copy fasta	LRRC57	chr15	42532829	42553793