JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC57_chr15_42532829_42553793	0/0	t0004	6385	18	9	2	4	0	3	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0005	6386	15	5	4	5	0	1	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0006	6387	13	6	3	1	2	1	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0007	6380	10	9	1	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/1	t0008	6385	9	0	1	7	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0009	6384	6	0	0	6	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0010	6385	6	0	5	1	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0011	6385	5	5	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0012	6383	5	0	0	5	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0013	6388	4	3	1	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0014	6380	4	4	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0015	6386	3	3	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0016	6381	3	3	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0017	6384	3	0	2	0	0	1	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0018	6387	3	0	0	3	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0019	6386	3	0	3	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0020	6379	2	1	1	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0021	6389	2	0	1	0	0	1	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0022	6388	2	1	1	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0023	6386	2	0	1	1	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0024	6394	2	2	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0025	6385	2	0	1	1	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0026	6385	2	0	0	2	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0027	6384	2	0	0	0	0	2	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0028	6384	2	2	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0029	6385	2	2	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0030	6388	2	0	1	0	1	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0031	6385	1	1	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0032	6386	1	1	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0033	6384	1	0	0	1	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0034	6381	1	1	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0035	6382	1	1	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0036	6379	1	1	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0037	6380	1	0	1	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0038	6389	1	0	0	0	0	1	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0039	6389	1	1	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0040	6387	1	0	0	0	0	1	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0041	6390	1	0	1	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0042	6389	1	0	1	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0043	6387	1	0	0	0	0	1	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0044	6388	1	1	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0045	6388	1	0	1	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0046	6383	1	0	0	1	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0047	6384	1	0	0	1	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0048	6386	1	0	0	1	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0049	6384	1	0	0	0	0	1	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0050	6386	1	0	0	1	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0051	6383	1	0	0	1	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0052	6385	1	0	0	0	0	1	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0053	6384	1	0	0	1	0	0	copy fasta	LRRC57	chr15	42532829	42553793