JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC57_chr15_42532829_42553793	0/0	t0104	6388	1	0	0	1	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0105	6386	1	0	0	1	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0106	6387	1	0	0	1	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0107	6387	1	0	0	1	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0108	6386	1	1	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0109	6386	1	1	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0110	6387	1	1	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0111	6386	1	1	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0112	6379	1	1	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0113	6388	1	1	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0114	6384	1	0	0	1	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0115	6385	1	0	0	1	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0116	6385	1	0	0	1	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0117	6385	1	0	0	0	1	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0118	6386	1	1	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0119	6386	1	1	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0120	6387	1	1	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0121	6387	1	1	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0122	6389	1	0	0	0	0	1	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0123	6385	1	0	1	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	t0124	6385	1	0	0	1	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC58_chr3_120319509_120354354	0/0	t0001	6804	96	15	9	60	1	11	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	1/0	t0002	6803	53	2	13	28	3	6	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/1	t0003	6803	40	5	20	0	7	7	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0004	6810	22	13	6	0	1	2	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0005	6803	21	4	3	10	0	4	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0006	6804	12	11	0	0	0	1	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0007	6803	10	1	6	0	0	3	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0008	6803	8	0	0	8	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0009	6805	6	2	0	4	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0010	6811	6	4	2	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0011	6804	5	0	0	5	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0012	6803	5	0	0	5	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0013	6813	4	0	0	4	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0014	6797	4	4	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0015	6805	4	0	0	4	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0016	6805	4	4	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0017	6810	4	0	0	0	0	4	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0018	6804	3	3	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0019	6798	3	3	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0020	6804	3	0	0	0	0	3	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0021	6804	3	0	1	2	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0022	6803	3	0	3	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0023	6802	3	3	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0024	6801	3	3	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0025	6804	2	2	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0026	6805	2	1	1	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0027	6803	2	2	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0028	6800	2	2	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0029	6803	2	0	0	2	0	0	copy fasta	LRRC58	chr3	120319509	120354354