JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC58_chr3_120319509_120354354	0/0	t0030	6804	2	0	1	0	0	1	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0031	6803	2	0	0	0	2	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0032	6797	2	2	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0033	6803	2	0	1	0	1	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0034	6810	2	0	2	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0035	6782	1	0	0	1	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0036	6804	1	0	0	0	0	1	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0037	6803	1	0	0	1	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0038	6805	1	1	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0039	6805	1	1	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0040	6803	1	1	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0041	6803	1	0	0	1	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0042	6804	1	0	0	1	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0043	6803	1	0	0	1	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0044	6803	1	0	0	0	0	1	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0045	6802	1	0	0	1	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0046	6804	1	0	1	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0047	6804	1	0	0	0	0	1	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0048	6804	1	0	0	1	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0049	6804	1	0	0	1	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0050	6804	1	0	0	1	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0051	6804	1	0	0	1	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0052	6803	1	0	0	1	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0053	6803	1	0	0	1	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0054	6803	1	0	0	0	0	1	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0055	6803	1	0	1	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0056	6802	1	0	1	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0057	6803	1	0	0	1	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0058	6804	1	0	0	1	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0059	6804	1	0	1	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0060	6803	1	1	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0061	6812	1	0	1	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0062	6811	1	0	1	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0063	6810	1	1	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0064	6803	1	0	0	0	1	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	t0065	6811	1	1	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC59_chr17_50376238_50402523	1/1	t0001	1957	211	39	35	103	6	26	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0002	1957	55	1	22	21	6	5	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0003	1957	44	10	18	4	6	6	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0004	1958	17	17	0	0	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0005	1958	7	5	1	0	0	1	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0006	1958	5	5	0	0	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0007	1957	2	2	0	0	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0008	1957	2	0	0	2	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0009	1957	2	0	2	0	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0010	1957	2	2	0	0	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0011	1958	1	1	0	0	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0012	1957	1	1	0	0	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0013	1957	1	0	0	1	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0014	1957	1	0	0	1	0	0	copy fasta	LRRC59	chr17	50376238	50402523