JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC59_chr17_50376238_50402523	0/0	t0015	1971	1	0	0	1	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0016	1957	1	1	0	0	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0017	1957	1	0	0	1	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0018	1957	1	1	0	0	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0019	1957	1	1	0	0	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0020	1957	1	0	0	1	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0021	1957	1	1	0	0	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0022	1957	1	0	0	1	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	t0023	1957	1	1	0	0	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC61_chr7_150318355_150343156	1/0	t0001	1036	196	37	39	87	5	27	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/1	t0002	1036	92	2	14	62	4	9	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	t0003	1036	24	0	0	24	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	t0004	1036	21	14	1	5	1	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	t0005	1036	12	11	1	0	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	t0006	1036	8	7	1	0	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	t0007	1036	8	0	0	8	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	t0008	1036	5	5	0	0	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	t0009	1036	5	5	0	0	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	t0010	1036	4	4	0	0	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	t0011	1032	4	4	0	0	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	t0012	1036	2	0	0	2	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	t0013	1036	1	1	0	0	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	t0014	1036	1	1	0	0	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	t0015	1036	1	0	0	1	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	t0016	1036	1	0	0	1	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	t0017	1036	1	1	0	0	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC63_chr13_46206928_46282115	1/1	t0001	678	104	23	15	55	4	5	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0002	678	71	20	14	22	4	11	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0003	692	17	1	1	14	1	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0004	694	15	0	2	11	0	2	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0005	678	15	0	2	9	0	4	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0006	690	11	0	5	5	0	1	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0007	674	10	0	3	4	0	3	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0008	694	9	0	0	6	1	2	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0009	690	9	0	1	7	0	1	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0010	692	8	0	2	5	0	1	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0011	680	8	0	7	1	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0012	676	7	1	4	1	1	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0013	696	6	0	2	4	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0014	658	6	6	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0015	680	6	1	1	2	1	1	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0016	698	5	0	0	4	0	1	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0017	688	5	1	1	3	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0018	658	5	5	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0019	676	5	3	1	1	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0020	674	4	4	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0021	694	4	0	0	4	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0022	692	4	0	0	0	3	1	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0023	686	3	3	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0024	678	3	1	2	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115