JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC63_chr13_46206928_46282115	0/0	t0025	678	3	3	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0026	674	3	0	1	2	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0027	678	2	0	0	2	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0028	690	2	0	0	2	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0029	698	2	0	0	2	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0030	678	2	2	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0031	674	2	2	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0032	692	1	0	0	1	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0033	692	1	0	0	1	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0034	702	1	0	0	1	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0035	700	1	0	1	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0036	693	1	0	0	1	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0037	676	1	0	0	0	1	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0038	690	1	0	0	1	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0039	674	1	1	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0040	698	1	0	0	0	0	1	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0041	694	1	0	0	1	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0042	680	1	0	1	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0043	676	1	0	0	0	0	1	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0044	702	1	0	0	1	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0045	697	1	0	0	1	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0046	696	1	0	0	1	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0047	693	1	0	0	1	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0048	678	1	1	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0049	696	1	1	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0050	678	1	1	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0051	676	1	0	0	1	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0052	678	1	0	1	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0053	678	1	1	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0054	678	1	0	0	1	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0055	696	1	0	0	1	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0056	690	1	0	0	1	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0057	678	1	1	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0058	658	1	1	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0059	678	1	0	0	0	0	1	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0060	678	1	0	1	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	t0061	676	1	1	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC66_chr4_51988652_52025363	0/1	t0001	793	167	66	18	60	3	19	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	1/0	t0002	793	149	16	41	62	13	16	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	t0003	790	15	1	3	11	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	t0004	793	2	1	0	0	0	1	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	t0005	793	1	1	0	0	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	t0006	793	1	1	0	0	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	t0007	793	1	0	0	1	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC69_chr8_91097619_91224257	1/1	t0001	301	302	72	50	142	12	24	copy fasta	LRRC69	chr8	91097619	91224257
LRRC69_chr8_91097619_91224257	0/0	t0002	301	13	13	0	0	0	0	copy fasta	LRRC69	chr8	91097619	91224257
LRRC69_chr8_91097619_91224257	0/0	t0003	301	3	3	0	0	0	0	copy fasta	LRRC69	chr8	91097619	91224257
LRRC70_chr5_62573819_62586446	1/1	t0001	295	437	77	78	218	16	46	copy fasta	LRRC70	chr5	62573819	62586446
LRRC70_chr5_62573819_62586446	0/0	t0002	295	6	6	0	0	0	0	copy fasta	LRRC70	chr5	62573819	62586446
LRRC70_chr5_62573819_62586446	0/0	t0003	295	6	6	0	0	0	0	copy fasta	LRRC70	chr5	62573819	62586446