Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APOL6_chr22_35643446_35673404	0/0	t0003	9044	18	0	0	18	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0004	9034	13	1	7	4	1	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0005	9038	10	2	2	1	0	5	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0006	9044	6	0	0	3	0	3	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0007	9034	6	0	1	5	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0008	9048	5	0	0	5	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0009	9036	5	0	5	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0010	9044	4	4	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0011	9035	4	1	0	3	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0012	9034	4	4	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0013	9039	3	2	1	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0014	9034	3	3	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0015	9035	3	0	0	3	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0016	9032	3	3	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0017	9034	3	1	1	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0018	9045	2	0	1	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0019	9040	2	2	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0020	9038	2	0	2	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0021	9037	2	2	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0022	9037	2	2	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0023	9035	2	0	0	2	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0024	9032	2	2	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0025	9034	2	0	0	0	0	2	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0026	9038	2	0	0	0	0	2	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0027	9034	2	2	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0028	9052	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0029	9049	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0030	9048	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0031	9048	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0032	9048	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0033	9047	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0034	9045	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0035	9045	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0036	9043	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0037	9044	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0038	9042	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0039	9040	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0040	9040	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0041	9041	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0042	9040	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0043	9042	1	0	0	0	0	1	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0044	9038	1	0	1	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0045	9037	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0046	9039	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0047	9039	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0048	9035	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0049	9037	1	0	0	0	0	1	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0050	9034	1	0	0	0	1	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0051	9022	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0052	9034	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404