JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC70_chr5_62573819_62586446	0/0	t0004	295	1	1	0	0	0	0	copy fasta	LRRC70	chr5	62573819	62586446
LRRC71_chr1_156915632_156938094	1/1	t0001	298	395	89	77	165	16	46	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	t0002	298	3	3	0	0	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	t0003	298	2	0	0	2	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	t0004	298	1	0	0	1	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	t0005	298	1	0	1	0	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC72_chr7_16521825_16586568	1/1	t0001	208	410	98	74	172	16	48	copy fasta	LRRC72	chr7	16521825	16586568
LRRC73_chr6_43501968_43515346	1/1	t0001	832	255	57	68	85	12	31	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	t0002	832	61	2	5	45	1	8	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	t0003	832	12	12	0	0	0	0	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	t0004	832	8	8	0	0	0	0	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	t0005	832	7	7	0	0	0	0	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	t0006	832	7	0	1	1	2	3	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	t0007	832	4	4	0	0	0	0	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	t0008	832	2	2	0	0	0	0	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	t0009	832	2	2	0	0	0	0	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	t0010	832	2	0	0	1	1	0	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	t0011	832	2	2	0	0	0	0	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	t0012	832	1	1	0	0	0	0	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	t0013	832	1	1	0	0	0	0	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	t0014	832	1	1	0	0	0	0	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	t0015	832	1	1	0	0	0	0	copy fasta	LRRC73	chr6	43501968	43515346
LRRC74A_chr14_76821408_76875304	1/1	t0001	446	251	34	54	119	12	30	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	t0002	446	65	4	3	57	1	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	t0003	446	52	24	11	1	5	11	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	t0004	446	16	15	1	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	t0005	446	10	10	0	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	t0006	446	4	4	0	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	t0007	446	2	2	0	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	t0008	446	2	2	0	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	t0009	446	1	1	0	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	t0010	446	1	0	1	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	t0011	446	1	0	1	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	t0012	446	1	0	1	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	t0013	446	1	0	0	0	0	1	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	t0014	446	1	0	0	1	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74B_chr22_21040946_21069168	0/0	t0001	2534	41	5	18	10	5	3	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0002	2542	19	0	0	19	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0003	2542	17	0	2	7	0	8	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0004	2534	16	0	1	15	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0005	2537	12	0	0	12	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0006	2536	12	0	9	3	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/1	t0007	2534	10	0	6	0	2	1	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0008	2542	10	0	0	10	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0009	2536	10	0	0	10	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0010	2537	9	0	6	3	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0011	2536	9	0	0	8	0	1	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0012	2535	9	0	0	9	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0013	2537	7	0	0	7	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0014	2535	6	1	2	2	0	1	copy fasta	LRRC74B	chr22	21040946	21069168