JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC74B_chr22_21040946_21069168	0/0	t0115	2541	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0116	2542	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0117	2542	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0118	2536	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0119	2536	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0120	2536	1	0	1	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0121	2536	1	0	1	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0122	2535	1	0	0	0	0	1	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0123	2536	1	0	0	0	1	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0124	2534	1	0	0	0	0	1	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0125	2535	1	0	0	0	1	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0126	2542	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0127	2535	1	0	0	0	0	1	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0128	2535	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0129	2535	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0130	2536	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0131	2535	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0132	2535	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0133	2538	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0134	2543	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0135	2536	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0136	2535	1	0	1	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0137	2536	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0138	2535	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0139	2536	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0140	2535	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0141	2535	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0142	2541	1	0	0	0	0	1	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0143	2534	1	0	1	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0144	2541	1	0	0	0	0	1	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0145	2534	1	0	0	0	0	1	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0146	2540	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0147	2535	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0148	2540	1	0	0	0	0	1	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0149	2536	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0150	2536	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0151	2536	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0152	2536	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0153	2535	1	0	1	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0154	2535	1	0	1	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0155	2535	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0156	2535	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0157	2534	1	0	0	0	0	1	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0158	2535	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0159	2534	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0160	2537	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0161	2534	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0162	2535	1	0	1	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0163	2536	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0164	2534	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168