JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC74B_chr22_21040946_21069168	0/0	t0165	2534	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0166	2534	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0167	2536	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0168	2535	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0169	2534	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0170	2542	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0171	2536	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0172	2543	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0173	2536	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0174	2542	1	0	1	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0175	2541	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0176	2541	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0177	2540	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0178	2537	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0179	2536	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0180	2535	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0181	2535	1	0	0	0	0	1	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0182	2535	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0183	2542	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0184	2536	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0185	2534	1	0	0	0	0	1	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0186	2535	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0187	2534	1	0	0	0	1	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0188	2535	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0189	2541	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0190	2540	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0191	2534	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0192	2533	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0193	2535	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0194	2542	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0195	2534	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0196	2534	1	0	1	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	t0197	2536	1	0	1	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	1/0	t0198	2536	1	0	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC75A_chr17_16436577_16497193	0/1	t0001	2214	106	45	18	30	5	7	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0002	2214	79	9	18	36	1	15	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0003	2214	57	13	17	15	2	10	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0004	2214	36	0	12	12	4	8	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0005	2215	10	1	5	1	3	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0006	2215	9	5	2	2	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0007	2215	8	5	1	2	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0008	2213	6	3	1	2	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0009	2214	4	4	0	0	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0010	2213	4	4	0	0	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0011	2214	3	3	0	0	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0012	2213	3	0	0	3	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0013	2214	2	0	1	0	1	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0014	2213	2	0	0	1	0	1	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0015	2213	1	1	0	0	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0016	2213	1	1	0	0	0	0	copy fasta	LRRC75A	chr17	16436577	16497193